chewBBACA
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Getting Started
Overview
Important Notes
Useful links
Installation
Quick Start
User Guide
CreateSchema - Create a gene-by-gene schema
AlleleCall - Determine the allelic profiles of a set of genomes
SchemaEvaluator - Build an interactive report for schema evaluation
AlleleCallEvaluator - Build an interactive report for allele calling results evaluation
ExtractCgMLST - Determine the set of loci that constitute the core genome
RemoveGenes - Remove a set of loci from allele calling results
PrepExternalSchema - Adapt an external schema to be used with chewBBACA
JoinProfiles - Join allele calling results from different runs
UniprotFinder - Retrieve annotations for loci in a schema
DownloadSchema - Download a schema from Chewie-NS
LoadSchema - Upload a schema to Chewie-NS
SyncSchema - Synchronize a schema with its remote version in Chewie-NS
NSStats - Retrieve basic information about the species and schemas in Chewie-NS
Tutorials
Step-by-step Tutorial
Integration with Chewie-NS
Help and support
Contacts
FAQ
chewBBACA
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