JoinProfiles - Join allele calling results from different runs
Basic Usage
chewBBACA.py JoinProfiles -p /path/to/ProfilesFile1 /path/to/ProfilesFile2 ... -o /path/to/OutputFile
Parameters
-p, --profiles (Required) Paths to the files containing allelic profiles determined by
the AlleleCall module. It is possible to provide any number of files.
The results must have been determined with the same schema and share
all the loci or a subset of the loci if using the --common parameter.
-o, --output-file (Required) Path to the output file.
--common (Optional) Merge the results based on the subset of loci shared between
all files. (default: False).
Important
It is necessary to pass the --common
argument if the input files do not have the same
set of loci (this option creates a new file only with the set of loci shared between all
input files).
Outputs
The process creates a TSV file with the allelic profiles of all samples in the input files.