Welcome to chewBBACA’s documentation!
- CreateSchema - Create a gene-by-gene schema
- AlleleCall - Determine the allelic profiles of a set of genomes
- SchemaEvaluator - Build an interactive report for schema evaluation
- AlleleCallEvaluator - Build an interactive report for allele calling results evaluation
- ExtractCgMLST - Determine the set of loci that constitute the core genome
- RemoveGenes - Remove a set of loci from allele calling results
- PrepExternalSchema - Adapt an external schema to be used with chewBBACA
- JoinProfiles - Join allele calling results from different runs
- UniprotFinder - Retrieve annotations for loci in a schema
- DownloadSchema - Download a schema from Chewie-NS
- LoadSchema - Upload a schema to Chewie-NS
- SyncSchema - Synchronize a schema with its remote version in Chewie-NS
- NSStats - Retrieve basic information about the species and schemas in Chewie-NS