RemoveGenes - Remove a set of loci from allele calling results ============================================================== Basic Usage ----------- :: chewBBACA.py RemoveGenes -i /path/to/ProfilesFile -g /path/to/GenesListFile -o path/to/OutputFile Parameters ---------- :: -i, --input-file (Required) Path to a TSV file with allelic profiles determined by the AlleleCall module. -g, --genes-list (Required) Path to a file with a list of genes to remove, one identifier per line. -o, --output-file (Required) Path to the output file. --inverse (Optional) If provided, the genes included in the list will be kept, and all other genes will be removed (default: False). Outputs ------- The process creates a TSV file without the columns matching the genes in the input genes list or only with the columns matching those genes if the ``--inverse`` parameter was provided.